Variant report

Variant	rs1483410
Chromosome Location	chr11:83756159-83756160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11233878	0.87[EUR][1000 genomes]
rs11233885	0.88[EUR][1000 genomes]
rs11233886	0.90[EUR][1000 genomes]
rs11233887	0.90[EUR][1000 genomes]
rs11233888	0.90[EUR][1000 genomes]
rs11233889	0.86[EUR][1000 genomes]
rs11233891	0.90[EUR][1000 genomes]
rs11233892	0.90[EUR][1000 genomes]
rs12274345	0.88[EUR][1000 genomes]
rs12275051	0.90[EUR][1000 genomes]
rs12275529	0.90[EUR][1000 genomes]
rs12280070	0.88[EUR][1000 genomes]
rs12282675	0.88[EUR][1000 genomes]
rs12286025	0.90[EUR][1000 genomes]
rs12286565	0.88[EUR][1000 genomes]
rs12289688	0.88[EUR][1000 genomes]
rs12290311	0.85[EUR][1000 genomes]
rs12294547	0.88[EUR][1000 genomes]
rs12295053	0.88[EUR][1000 genomes]
rs12575693	0.86[EUR][1000 genomes]
rs28673785	0.98[EUR][1000 genomes]
rs56209818	0.88[EUR][1000 genomes]
rs7115622	0.81[EUR][1000 genomes]
rs73513704	0.90[EUR][1000 genomes]
rs7932501	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv898030	chr11:83730570-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv1806027	chr11:83740599-83775326	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83755200-83764000	Weak transcription	Brain Substantia Nigra	brain

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