Variant report

Variant	rs12299013
Chromosome Location	chr12:10257466-10257467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11053583	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11053584	0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11053585	0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12300411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12305864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2087308	0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2101466	0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55909700	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56054444	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56915317	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58747130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60168092	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs60752837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61316374	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61704402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6488260	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7294944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7301063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7301313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7301474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7304980	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7305987	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7306132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7306138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7314731	0.94[AFR][1000 genomes]
rs7962985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7970226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7976707	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7979911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9651848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10255800-10264200	Weak transcription	Monocytes-CD14+_RO01746	blood

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