Variant report

Variant	rs60752837
Chromosome Location	chr12:10261535-10261536
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:10261522-10261572	AG10803	skin:	n/a
2	chr12:10261522-10261572	HCF	heart:	n/a
3	chr12:10261522-10261572	HRPEpiC	eye:	n/a
4	chr12:10261522-10261572	RPTEC	kidney:	n/a
5	chr12:10261522-10261572	HAEpiC	amniotic membrane:	n/a
6	chr12:10261522-10261572	HUVEC	blood vessel:	n/a
7	chr12:10261522-10261572	AoSMC	blood vessel:	n/a
8	chr12:10261522-10261572	HNPCEpiC	eye:	n/a
9	chr12:10261522-10261572	A549	lung:	n/a
10	chr12:10261522-10261572	AG04449	skin:	fetal
11	chr12:10261522-10261572	Hela-S3	cervix:	n/a
12	chr12:10261522-10261572	T-47D	breast:	n/a
13	chr12:10261522-10261572	SKMC	muscle:	n/a
14	chr12:10261522-10261572	HCM	heart:	n/a
15	chr12:10261522-10261572	NB4	blood:	n/a
16	chr12:10261522-10261572	SAEC	small airway:	n/a
17	chr12:10261522-10261572	HRCEpiC	kidney:	n/a
18	chr12:10261522-10261572	U87	brain:	n/a
19	chr12:10261522-10261572	HEEpiC	esophagus:	n/a
20	chr12:10261522-10261572	MCF-7	breast:	n/a
21	chr12:10261522-10261572	Jurkat	blood:	n/a
22	chr12:10261522-10261572	HL-60	blood:	n/a
23	chr12:10261522-10261572	NHBE	bronchial:	n/a
24	chr12:10261522-10261572	HMEC	breast:	n/a
25	chr12:10261522-10261572	GM19239	blood:	n/a
26	chr12:10261522-10261572	PrEC	prostate:	n/a
27	chr12:10261522-10261572	SK-N-SH	brain:	n/a
28	chr12:10261522-10261572	ProgFib	skin:	n/a
29	chr12:10261522-10261572	AG09319	gingival:	n/a
30	chr12:10261522-10261572	CMK	blood:	n/a
31	chr12:10261522-10261572	GM12891	blood:	n/a
32	chr12:10261522-10261572	NH-A	brain:	n/a
33	chr12:10261522-10261572	BE2_C	brain:	n/a
34	chr12:10261522-10261572	HIPEpiC	eye:	n/a
35	chr12:10261522-10261572	HEK293	kidney:	embryo
36	chr12:10261522-10261572	AG09309	skin:	n/a
37	chr12:10261522-10261572	HRE	kidney:	n/a
38	chr12:10261522-10261572	LNCaP	prostate:	n/a
39	chr12:10261522-10261572	HepG2	liver:	n/a
40	chr12:10261522-10261572	HCPEpiC	choroid plexus:	n/a
41	chr12:10261522-10261572	K562	blood:	n/a
42	chr12:10261522-10261572	Caco-2	colon:	n/a
43	chr12:10261522-10261572	NHDF-neo	bronchial:	n/a
44	chr12:10261522-10261572	SK-N-SH_RA	brain:	n/a
45	chr12:10261522-10261572	ECC-1	luminal epithelium:	n/a
46	chr12:10261522-10261572	MCF10A-Er-Src	breast:	n/a
47	chr12:10261522-10261572	HPAEpiC	pulmonary alveolar:	n/a
48	chr12:10261522-10261572	PANC-1	pancreas:	n/a
49	chr12:10261522-10261572	GM06990	blood:	n/a
50	chr12:10261522-10261572	AG04450	lung:	fetal

No data

Variant related genes	Relation type
HNRNPABP1	CpG island

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11053583	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11053584	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11053585	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12299013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12300411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12305864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2087308	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2101466	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55909700	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56054444	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56915317	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58747130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60168092	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61316374	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61704402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6488260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7294944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7301063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7301313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7301474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7304980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7305987	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7306132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7306138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7314731	0.94[AFR][1000 genomes]
rs7962985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7970226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7976707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7979911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9651848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10255800-10264200	Weak transcription	Monocytes-CD14+_RO01746	blood

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