Variant report

Variant	rs12300155
Chromosome Location	chr12:105955307-105955308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105944792..105946780-chr12:105955206..105957369,2	MCF-7	breast:
2	chr12:105952871..105955761-chr12:105958495..105960163,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C12orf75-6	chr12:105955031-105962713	NONHSAT030458

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11112602	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12301860	1.00[AMR][1000 genomes]
rs12303555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12306183	1.00[AMR][1000 genomes]
rs12314435	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12318395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17037175	1.00[AMR][1000 genomes]
rs60596663	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105938800-105964600	Weak transcription	Aorta	Aorta
2	chr12:105948200-105955800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:105948400-105955800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr12:105949800-105955400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:105950000-105955400	Weak transcription	Right Atrium	heart
6	chr12:105950000-105956400	Strong transcription	HUVEC	blood vessel
7	chr12:105950200-105955400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:105951800-105955800	Weak transcription	Adipose Nuclei	Adipose
9	chr12:105952000-105955800	Weak transcription	Left Ventricle	heart
10	chr12:105954200-105955400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:105954200-105955400	ZNF genes & repeats	A549	lung
12	chr12:105954600-105955400	Enhancers	Hela-S3	cervix
13	chr12:105954600-105957400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:105954800-105955800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr12:105954800-105955800	Enhancers	NH-A	brain
16	chr12:105955000-105955800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr12:105955000-105955800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr12:105955000-105956000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr12:105955000-105956200	Enhancers	HSMMtube	muscle
20	chr12:105955000-105958000	Enhancers	Fetal Muscle Leg	muscle
21	chr12:105955200-105955600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr12:105955200-105955600	Enhancers	NHEK	skin
23	chr12:105955200-105955800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr12:105955200-105955800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr12:105955200-105955800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr12:105955200-105955800	Enhancers	Osteobl	bone
27	chr12:105955200-105956000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr12:105955200-105956200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr12:105955200-105956400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr12:105955200-105956400	Enhancers	Fetal Lung	lung
31	chr12:105955200-105956400	Enhancers	HSMM	muscle
32	chr12:105955200-105956600	Enhancers	NHDF-Ad	bronchial
33	chr12:105955200-105956800	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr12:105955200-105957200	Enhancers	HMEC	breast

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