Variant report

Variant	rs12303555
Chromosome Location	chr12:105932712-105932713
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11112602	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12300155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12301860	1.00[AMR][1000 genomes]
rs12306183	1.00[AMR][1000 genomes]
rs12314435	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12318395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17037175	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105932000-105934000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr12:105932000-105934000	Enhancers	Fetal Muscle Leg	muscle
3	chr12:105932200-105932800	Weak transcription	HUVEC	blood vessel
4	chr12:105932200-105934000	Enhancers	HSMM	muscle
5	chr12:105932200-105934000	Enhancers	HSMMtube	muscle
6	chr12:105932400-105932800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:105932400-105932800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:105932400-105932800	Bivalent Enhancer	Fetal Stomach	stomach
9	chr12:105932400-105933800	Enhancers	Fetal Muscle Trunk	muscle
10	chr12:105932400-105934000	Enhancers	Colon Smooth Muscle	Colon
11	chr12:105932400-105934000	Enhancers	Stomach Smooth Muscle	stomach
12	chr12:105932400-105934200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr12:105932400-105934200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr12:105932600-105932800	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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