Variant report

Variant	rs12306183
Chromosome Location	chr12:105880989-105880990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11112602	1.00[AMR][1000 genomes]
rs12300155	1.00[AMR][1000 genomes]
rs12301860	1.00[AMR][1000 genomes]
rs12303555	1.00[AMR][1000 genomes]
rs12314435	1.00[AMR][1000 genomes]
rs12318395	1.00[AMR][1000 genomes]
rs17037175	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv899502	chr12:105862964-105904525	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3325324	chr12:105878622-105883020	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105863200-105884200	Weak transcription	Right Atrium	heart
2	chr12:105874400-105893600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:105875400-105904400	Weak transcription	Aorta	Aorta
4	chr12:105876400-105881800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:105878400-105881600	Enhancers	HUVEC	blood vessel
6	chr12:105879200-105884200	Weak transcription	Psoas Muscle	Psoas
7	chr12:105879400-105888800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:105879600-105882000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:105879600-105885800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:105879800-105886400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:105880000-105881800	Weak transcription	Adipose Nuclei	Adipose
12	chr12:105880200-105885800	Weak transcription	Placenta	Placenta
13	chr12:105880400-105881000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:105880400-105881000	ZNF genes & repeats	Fetal Kidney	kidney
15	chr12:105880600-105881800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr12:105880600-105885800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr12:105880600-105886000	Weak transcription	NH-A	brain
18	chr12:105880800-105886000	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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