Variant report

Variant	rs12302300
Chromosome Location	chr12:33494269-33494270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10466764	0.88[ASN][1000 genomes]
rs10772078	0.83[ASN][1000 genomes]
rs10772080	0.83[ASN][1000 genomes]
rs10772081	0.83[ASN][1000 genomes]
rs10772082	0.83[ASN][1000 genomes]
rs10772084	0.83[ASN][1000 genomes]
rs10844535	0.80[ASN][1000 genomes]
rs10844536	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10844538	0.82[EUR][1000 genomes]
rs10844539	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10844540	0.89[EUR][1000 genomes]
rs10844546	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10844547	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10844550	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10844551	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10844558	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844566	0.90[ASN][1000 genomes]
rs10844567	0.90[ASN][1000 genomes]
rs10844568	0.90[ASN][1000 genomes]
rs10844570	0.90[ASN][1000 genomes]
rs10844571	0.90[ASN][1000 genomes]
rs10844572	0.90[ASN][1000 genomes]
rs10844592	0.83[ASN][1000 genomes]
rs10844593	0.83[ASN][1000 genomes]
rs10844594	0.83[ASN][1000 genomes]
rs10844595	0.83[ASN][1000 genomes]
rs10844596	0.83[ASN][1000 genomes]
rs10844598	0.83[ASN][1000 genomes]
rs10844599	0.83[ASN][1000 genomes]
rs10844600	0.81[ASN][1000 genomes]
rs10844601	0.83[ASN][1000 genomes]
rs10844602	0.83[ASN][1000 genomes]
rs10844603	0.83[ASN][1000 genomes]
rs10844604	0.83[ASN][1000 genomes]
rs10844605	0.83[ASN][1000 genomes]
rs10844606	0.83[ASN][1000 genomes]
rs10844608	0.83[ASN][1000 genomes]
rs11052596	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11052597	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11052599	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11052602	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11052608	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11052615	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11052616	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11052630	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11052637	1.00[ASN][1000 genomes]
rs11052649	0.95[ASN][1000 genomes]
rs11052657	0.90[ASN][1000 genomes]
rs11052659	0.90[ASN][1000 genomes]
rs11052663	0.90[ASN][1000 genomes]
rs11052669	0.90[ASN][1000 genomes]
rs11052690	0.83[ASN][1000 genomes]
rs11052694	0.83[ASN][1000 genomes]
rs11052695	0.83[ASN][1000 genomes]
rs11052696	0.83[ASN][1000 genomes]
rs11052697	0.83[ASN][1000 genomes]
rs11052698	0.83[ASN][1000 genomes]
rs11052703	0.83[ASN][1000 genomes]
rs12227590	0.86[ASN][1000 genomes]
rs12318039	0.83[ASN][1000 genomes]
rs12322653	0.83[ASN][1000 genomes]
rs1482990	0.83[ASN][1000 genomes]
rs16916410	0.83[ASN][1000 genomes]
rs16921002	0.83[ASN][1000 genomes]
rs16921021	0.83[ASN][1000 genomes]
rs1905404	0.80[ASN][1000 genomes]
rs1905426	0.90[ASN][1000 genomes]
rs1947969	0.90[ASN][1000 genomes]
rs1994166	0.83[ASN][1000 genomes]
rs1994167	0.83[ASN][1000 genomes]
rs2389190	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2389198	0.83[ASN][1000 genomes]
rs35020525	0.90[ASN][1000 genomes]
rs4275702	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4514512	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4931716	1.00[ASN][1000 genomes]
rs56161708	0.83[ASN][1000 genomes]
rs58309791	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59499949	0.90[ASN][1000 genomes]
rs60231799	0.83[ASN][1000 genomes]
rs61041826	0.83[ASN][1000 genomes]
rs61929596	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6488154	1.00[ASN][1000 genomes]
rs6488155	1.00[ASN][1000 genomes]
rs6488156	0.95[ASN][1000 genomes]
rs7134644	0.95[ASN][1000 genomes]
rs7134904	0.95[ASN][1000 genomes]
rs7298158	0.83[ASN][1000 genomes]
rs7298455	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302123	0.83[ASN][1000 genomes]
rs7309592	0.90[ASN][1000 genomes]
rs73313956	0.83[ASN][1000 genomes]
rs7970433	0.90[ASN][1000 genomes]
rs7973722	0.90[ASN][1000 genomes]
rs7973728	0.90[ASN][1000 genomes]
rs9888364	0.90[ASN][1000 genomes]
rs9888374	0.90[ASN][1000 genomes]
rs9888427	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037459	chr12:33310703-33905662	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv541459	chr12:33310703-33905662	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv832368	chr12:33368962-33588498	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1035988	chr12:33399053-33699363	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv670	chr12:33458451-33503100	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv558247	chr12:33481504-34245756	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33493800-33494600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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