Variant report

Variant	rs12304906
Chromosome Location	chr12:44888635-44888636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12297317	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12304070	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12305158	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12305404	0.83[AMR][1000 genomes]
rs12306610	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12306717	0.83[AMR][1000 genomes]
rs12307033	0.83[AMR][1000 genomes]
rs12307089	0.83[AMR][1000 genomes]
rs12307572	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12308111	0.83[AMR][1000 genomes]
rs12309061	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12309926	0.83[AMR][1000 genomes]
rs12311526	0.83[AMR][1000 genomes]
rs12322847	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56706897	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57966823	0.83[AMR][1000 genomes]
rs58618082	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59069524	0.83[AMR][1000 genomes]
rs59369951	1.00[AMR][1000 genomes]
rs59536377	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59593996	0.83[AMR][1000 genomes]
rs60870141	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276292	0.83[AMR][1000 genomes]
rs73278392	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278393	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278400	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280305	0.83[AMR][1000 genomes]
rs73280308	0.83[AMR][1000 genomes]
rs7958305	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7967992	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44888400-44889400	ZNF genes & repeats	Pancreas	Pancrea
2	chr12:44888600-44889000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:44888600-44894000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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