Variant report

Variant	rs12306717
Chromosome Location	chr12:44895941-44895942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12297317	0.83[AMR][1000 genomes]
rs12304070	0.83[AMR][1000 genomes]
rs12304906	0.83[AMR][1000 genomes]
rs12305158	0.83[AMR][1000 genomes]
rs12306610	0.83[AMR][1000 genomes]
rs12307033	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12307089	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12307572	0.83[AMR][1000 genomes]
rs12309061	0.83[AMR][1000 genomes]
rs12311526	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12322847	0.83[AMR][1000 genomes]
rs56706897	0.83[AMR][1000 genomes]
rs58618082	0.83[AMR][1000 genomes]
rs59369951	0.83[AMR][1000 genomes]
rs59536377	0.83[AMR][1000 genomes]
rs60870141	0.83[AMR][1000 genomes]
rs73278392	0.83[AMR][1000 genomes]
rs73278393	0.83[AMR][1000 genomes]
rs73278394	0.83[AMR][1000 genomes]
rs73278400	0.83[AMR][1000 genomes]
rs73280305	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280308	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7958305	0.83[AMR][1000 genomes]
rs7967992	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44894800-44901400	Weak transcription	Brain Germinal Matrix	brain
2	chr12:44894800-44901400	Weak transcription	Fetal Brain Female	brain
3	chr12:44895400-44896600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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