Variant report
| Variant | rs12306610 |
|---|---|
| Chromosome Location | chr12:44889231-44889232 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:44887733..44889993-chr12:44891692..44893770,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs12297317 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12304070 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12304906 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12305158 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12305404 | 0.83[AMR][1000 genomes] |
| rs12306717 | 0.83[AMR][1000 genomes] |
| rs12307033 | 0.83[AMR][1000 genomes] |
| rs12307089 | 0.83[AMR][1000 genomes] |
| rs12307572 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12308111 | 0.83[AMR][1000 genomes] |
| rs12309061 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12309926 | 0.83[AMR][1000 genomes] |
| rs12311526 | 0.83[AMR][1000 genomes] |
| rs12322847 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56706897 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57966823 | 0.83[AMR][1000 genomes] |
| rs58618082 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59069524 | 0.83[AMR][1000 genomes] |
| rs59369951 | 1.00[AMR][1000 genomes] |
| rs59536377 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59593996 | 0.83[AMR][1000 genomes] |
| rs60870141 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73276292 | 0.83[AMR][1000 genomes] |
| rs73278392 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278393 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278394 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278400 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73280305 | 0.83[AMR][1000 genomes] |
| rs73280308 | 0.83[AMR][1000 genomes] |
| rs7958305 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7967992 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049818 | chr12:44486312-45133783 | Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:44888400-44889400 | ZNF genes & repeats | Pancreas | Pancrea |
| 2 | chr12:44888600-44894000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
