Variant report
| Variant | rs12305579 |
|---|---|
| Chromosome Location | chr12:61972524-61972525 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FAM19A2-2 | chr12:61972374-61972983 | l_663_chr12:61972373-62041342_thyroid |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11174099 | 1.00[EUR][1000 genomes] |
| rs11174121 | 1.00[EUR][1000 genomes] |
| rs11174135 | 1.00[EUR][1000 genomes] |
| rs11174151 | 1.00[EUR][1000 genomes] |
| rs11174156 | 1.00[EUR][1000 genomes] |
| rs11174167 | 1.00[EUR][1000 genomes] |
| rs12301609 | 1.00[EUR][1000 genomes] |
| rs12301651 | 1.00[EUR][1000 genomes] |
| rs12305869 | 1.00[EUR][1000 genomes] |
| rs12307906 | 1.00[EUR][1000 genomes] |
| rs12310261 | 0.81[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs12312418 | 1.00[EUR][1000 genomes] |
| rs12313937 | 1.00[EUR][1000 genomes] |
| rs12314551 | 1.00[EUR][1000 genomes] |
| rs12315987 | 1.00[EUR][1000 genomes] |
| rs12316239 | 1.00[EUR][1000 genomes] |
| rs12319647 | 1.00[EUR][1000 genomes] |
| rs12320238 | 1.00[EUR][1000 genomes] |
| rs12320387 | 1.00[EUR][1000 genomes] |
| rs12322039 | 1.00[EUR][1000 genomes] |
| rs1506860 | 0.83[AMR][1000 genomes] |
| rs1506861 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7294889 | 1.00[EUR][1000 genomes] |
| rs7297714 | 1.00[EUR][1000 genomes] |
| rs7299621 | 1.00[EUR][1000 genomes] |
| rs7314886 | 1.00[EUR][1000 genomes] |
| rs7980919 | 1.00[EUR][1000 genomes] |
| rs9651985 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1042044 | chr12:61256015-62196885 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv832434 | chr12:61823919-62033626 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
