Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11174099	1.00[EUR][1000 genomes]
rs11174121	1.00[EUR][1000 genomes]
rs11174135	1.00[EUR][1000 genomes]
rs11174151	1.00[EUR][1000 genomes]
rs11174155	0.81[YRI][hapmap]
rs11174156	1.00[EUR][1000 genomes]
rs12305579	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12305869	1.00[EUR][1000 genomes]
rs12307906	1.00[EUR][1000 genomes]
rs12310261	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs12312418	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs12313937	1.00[EUR][1000 genomes]
rs12315987	1.00[EUR][1000 genomes]
rs12316239	1.00[EUR][1000 genomes]
rs12319647	1.00[EUR][1000 genomes]
rs12320238	1.00[EUR][1000 genomes]
rs12320387	1.00[EUR][1000 genomes]
rs12322039	1.00[EUR][1000 genomes]
rs1506860	0.83[AMR][1000 genomes]
rs7294889	1.00[EUR][1000 genomes]
rs7297714	1.00[EUR][1000 genomes]
rs7299621	1.00[EUR][1000 genomes]
rs7314886	1.00[EUR][1000 genomes]
rs7980919	1.00[EUR][1000 genomes]
rs9651985	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832434	chr12:61823919-62033626	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:61968400-61969600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: