Variant report
| Variant | rs12315987 |
|---|---|
| Chromosome Location | chr12:62003745-62003746 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:61997467..62000090-chr12:62002259..62005246,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs11174099 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11174121 | 1.00[EUR][1000 genomes] |
| rs11174135 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11174151 | 1.00[EUR][1000 genomes] |
| rs11174155 | 0.82[YRI][hapmap] |
| rs11174156 | 1.00[EUR][1000 genomes] |
| rs11174167 | 1.00[EUR][1000 genomes] |
| rs11174170 | 1.00[EUR][1000 genomes] |
| rs11174171 | 1.00[EUR][1000 genomes] |
| rs11174178 | 1.00[EUR][1000 genomes] |
| rs11174179 | 1.00[EUR][1000 genomes] |
| rs12301609 | 1.00[EUR][1000 genomes] |
| rs12301651 | 1.00[EUR][1000 genomes] |
| rs12305579 | 1.00[EUR][1000 genomes] |
| rs12305869 | 1.00[EUR][1000 genomes] |
| rs12307906 | 1.00[EUR][1000 genomes] |
| rs12310261 | 0.88[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs12310815 | 1.00[EUR][1000 genomes] |
| rs12310971 | 1.00[EUR][1000 genomes] |
| rs12311143 | 1.00[EUR][1000 genomes] |
| rs12312418 | 0.86[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs12313937 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12314551 | 1.00[EUR][1000 genomes] |
| rs12316239 | 1.00[EUR][1000 genomes] |
| rs12319647 | 0.81[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12320238 | 1.00[EUR][1000 genomes] |
| rs12320387 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12322039 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1506861 | 1.00[EUR][1000 genomes] |
| rs7137620 | 1.00[EUR][1000 genomes] |
| rs7294889 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7297714 | 1.00[EUR][1000 genomes] |
| rs7299621 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7314886 | 1.00[EUR][1000 genomes] |
| rs7980919 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9651985 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1042044 | chr12:61256015-62196885 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv832434 | chr12:61823919-62033626 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:62003600-62004000 | Active TSS | Foreskin Melanocyte Primary Cells skin03 | Skin |
