Variant report

Variant	rs11174170
Chromosome Location	chr12:62172971-62172972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11174099	1.00[EUR][1000 genomes]
rs11174121	1.00[EUR][1000 genomes]
rs11174135	1.00[EUR][1000 genomes]
rs11174151	1.00[EUR][1000 genomes]
rs11174156	1.00[EUR][1000 genomes]
rs11174164	1.00[MEX][hapmap]
rs11174167	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11174171	1.00[EUR][1000 genomes]
rs11174178	1.00[EUR][1000 genomes]
rs11174179	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11174183	0.90[YRI][hapmap]
rs11174184	0.90[YRI][hapmap]
rs11174206	1.00[EUR][1000 genomes]
rs12300273	0.89[AMR][1000 genomes]
rs12301609	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12301651	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302070	1.00[EUR][1000 genomes]
rs12302650	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs12305869	1.00[EUR][1000 genomes]
rs12306721	1.00[EUR][1000 genomes]
rs12307176	1.00[EUR][1000 genomes]
rs12307906	1.00[EUR][1000 genomes]
rs12308834	1.00[EUR][1000 genomes]
rs12310261	1.00[EUR][1000 genomes]
rs12310815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12310971	1.00[EUR][1000 genomes]
rs12311143	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12312418	1.00[EUR][1000 genomes]
rs12312819	1.00[YRI][hapmap]
rs12313015	1.00[YRI][hapmap]
rs12313346	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs12313937	1.00[EUR][1000 genomes]
rs12314278	0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap]
rs12314551	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315987	1.00[EUR][1000 genomes]
rs12316239	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12316736	0.90[YRI][hapmap]
rs12318089	1.00[YRI][hapmap]
rs12319647	1.00[EUR][1000 genomes]
rs12319917	1.00[EUR][1000 genomes]
rs12319994	1.00[YRI][hapmap]
rs12320238	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320387	1.00[EUR][1000 genomes]
rs12320743	1.00[EUR][1000 genomes]
rs12322039	1.00[EUR][1000 genomes]
rs2359976	1.00[EUR][1000 genomes]
rs349873	1.00[MEX][hapmap]
rs349887	1.00[MEX][hapmap]
rs7137620	1.00[EUR][1000 genomes]
rs717274	1.00[MEX][hapmap]
rs7294889	1.00[EUR][1000 genomes]
rs7297714	1.00[EUR][1000 genomes]
rs7299621	1.00[EUR][1000 genomes]
rs7301639	1.00[EUR][1000 genomes]
rs7314886	1.00[EUR][1000 genomes]
rs7980919	1.00[EUR][1000 genomes]
rs9651985	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv826402	chr12:62116803-62178453	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv826403	chr12:62130037-62190482	ZNF genes & repeats Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1040154	chr12:62145382-62176964	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62163400-62173200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr12:62163400-62175200	Weak transcription	Aorta	Aorta
3	chr12:62170000-62177400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr12:62170800-62174400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:62170800-62175400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:62170800-62176200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:62171000-62175000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:62171000-62175400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:62171200-62174000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr12:62172200-62174000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr12:62172400-62173200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr12:62172400-62173600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:62172400-62174000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:62172400-62175000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr12:62172600-62174400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr12:62172800-62173000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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