Variant report

Variant	rs11174184
Chromosome Location	chr12:62207607-62207608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11174121	1.00[EUR][1000 genomes]
rs11174135	1.00[EUR][1000 genomes]
rs11174151	1.00[EUR][1000 genomes]
rs11174156	1.00[EUR][1000 genomes]
rs11174167	1.00[EUR][1000 genomes]
rs11174170	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11174171	1.00[EUR][1000 genomes]
rs11174178	1.00[EUR][1000 genomes]
rs11174179	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11174183	1.00[YRI][hapmap]
rs11174206	1.00[EUR][1000 genomes]
rs12301609	1.00[EUR][1000 genomes]
rs12301651	1.00[EUR][1000 genomes]
rs12302070	1.00[EUR][1000 genomes]
rs12302650	1.00[EUR][1000 genomes]
rs12305869	1.00[EUR][1000 genomes]
rs12306721	1.00[EUR][1000 genomes]
rs12307176	1.00[EUR][1000 genomes]
rs12307906	1.00[EUR][1000 genomes]
rs12308834	1.00[EUR][1000 genomes]
rs12310261	1.00[EUR][1000 genomes]
rs12310815	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12310971	1.00[EUR][1000 genomes]
rs12311143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12312418	1.00[EUR][1000 genomes]
rs12312819	0.86[YRI][hapmap]
rs12313015	0.87[YRI][hapmap]
rs12313346	0.89[YRI][hapmap]
rs12313937	1.00[EUR][1000 genomes]
rs12314278	1.00[YRI][hapmap]
rs12314551	1.00[EUR][1000 genomes]
rs12316239	1.00[EUR][1000 genomes]
rs12316736	1.00[YRI][hapmap]
rs12318089	0.87[YRI][hapmap]
rs12319647	1.00[EUR][1000 genomes]
rs12319917	1.00[EUR][1000 genomes]
rs12319994	0.86[YRI][hapmap]
rs12320238	1.00[EUR][1000 genomes]
rs12320387	1.00[EUR][1000 genomes]
rs12320743	1.00[EUR][1000 genomes]
rs12322039	1.00[EUR][1000 genomes]
rs2359976	1.00[EUR][1000 genomes]
rs7137620	1.00[EUR][1000 genomes]
rs7294889	1.00[EUR][1000 genomes]
rs7297714	1.00[EUR][1000 genomes]
rs7299621	1.00[EUR][1000 genomes]
rs7301639	1.00[EUR][1000 genomes]
rs7314886	1.00[EUR][1000 genomes]
rs7980919	1.00[EUR][1000 genomes]
rs9651985	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv977138	chr12:62199079-62211306	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv11147	chr12:62199825-62210977	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3497041	chr12:62200665-62211108	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3497052	chr12:62200665-62211108	ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2421373	chr12:62202570-62210820	ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv442272	chr12:62202570-62210820	ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv514672	chr12:62202621-62210789	ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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