Variant report

Variant	rs12313346
Chromosome Location	chr12:62182661-62182662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11174099	1.00[EUR][1000 genomes]
rs11174121	1.00[EUR][1000 genomes]
rs11174135	1.00[EUR][1000 genomes]
rs11174151	1.00[EUR][1000 genomes]
rs11174156	1.00[EUR][1000 genomes]
rs11174164	1.00[MEX][hapmap]
rs11174167	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11174170	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11174171	1.00[EUR][1000 genomes]
rs11174178	1.00[EUR][1000 genomes]
rs11174179	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11174183	0.90[YRI][hapmap]
rs11174184	0.89[YRI][hapmap]
rs11174206	1.00[EUR][1000 genomes]
rs12300273	0.89[AMR][1000 genomes]
rs12301609	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12301651	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302070	1.00[EUR][1000 genomes]
rs12302650	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs12305869	1.00[EUR][1000 genomes]
rs12306721	1.00[EUR][1000 genomes]
rs12307176	1.00[EUR][1000 genomes]
rs12307906	1.00[EUR][1000 genomes]
rs12308834	1.00[EUR][1000 genomes]
rs12310261	1.00[EUR][1000 genomes]
rs12310815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12310971	1.00[EUR][1000 genomes]
rs12311143	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12312418	1.00[EUR][1000 genomes]
rs12312819	1.00[YRI][hapmap]
rs12313015	1.00[YRI][hapmap]
rs12313937	1.00[EUR][1000 genomes]
rs12314278	0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap]
rs12314551	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315987	1.00[EUR][1000 genomes]
rs12316239	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12316736	0.89[YRI][hapmap]
rs12318089	1.00[YRI][hapmap]
rs12319647	1.00[EUR][1000 genomes]
rs12319917	1.00[EUR][1000 genomes]
rs12319994	1.00[YRI][hapmap]
rs12320238	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320387	1.00[EUR][1000 genomes]
rs12320743	1.00[EUR][1000 genomes]
rs12322039	1.00[EUR][1000 genomes]
rs2359976	1.00[EUR][1000 genomes]
rs349873	1.00[MEX][hapmap]
rs349887	1.00[MEX][hapmap]
rs7137620	1.00[EUR][1000 genomes]
rs717274	1.00[MEX][hapmap]
rs7294889	1.00[EUR][1000 genomes]
rs7297714	1.00[EUR][1000 genomes]
rs7299621	1.00[EUR][1000 genomes]
rs7301639	1.00[EUR][1000 genomes]
rs7314886	1.00[EUR][1000 genomes]
rs7980919	1.00[EUR][1000 genomes]
rs9651985	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv826403	chr12:62130037-62190482	ZNF genes & repeats Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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