Variant report
| Variant | rs12306142 |
|---|---|
| Chromosome Location | chr12:60497679-60497680 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:60493772..60496447-chr12:60496844..60499476,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11173317 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12296463 | 1.00[AMR][1000 genomes] |
| rs12297378 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12299963 | 0.93[AMR][1000 genomes] |
| rs12303842 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12303899 | 0.87[AMR][1000 genomes] |
| rs12307563 | 1.00[AMR][1000 genomes] |
| rs12308835 | 0.93[AMR][1000 genomes] |
| rs12309540 | 0.93[AMR][1000 genomes] |
| rs12313647 | 0.86[AFR][1000 genomes] |
| rs12316539 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12317243 | 0.93[AMR][1000 genomes] |
| rs12321091 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12321390 | 0.93[AMR][1000 genomes] |
| rs12322592 | 0.93[AMR][1000 genomes] |
| rs1493326 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17123427 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1948852 | 0.87[AMR][1000 genomes] |
| rs57945859 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61357417 | 0.93[AMR][1000 genomes] |
| rs7133571 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7300765 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7309556 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7310877 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73364859 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73370791 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048137 | chr12:60432594-60515455 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv428591 | chr12:60446360-60631044 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv427913 | chr12:60462443-60569344 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv2760273 | chr12:60489188-60561925 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv826394 | chr12:60491264-60516940 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60496000-60498000 | Weak transcription | NHDF-Ad | bronchial |
