Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11173317	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12296463	1.00[AMR][1000 genomes]
rs12297378	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12299963	0.93[AMR][1000 genomes]
rs12303842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12303899	0.87[AMR][1000 genomes]
rs12306142	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12307563	1.00[AMR][1000 genomes]
rs12308835	0.93[AMR][1000 genomes]
rs12309540	0.93[AMR][1000 genomes]
rs12313647	0.87[AFR][1000 genomes]
rs12316539	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12317243	0.93[AMR][1000 genomes]
rs12321091	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12321390	0.93[AMR][1000 genomes]
rs12322592	0.93[AMR][1000 genomes]
rs17123427	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1948852	0.87[AMR][1000 genomes]
rs57945859	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61357417	0.93[AMR][1000 genomes]
rs7133571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7300765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7309556	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7310877	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364859	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73370791	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2760273	chr12:60489188-60561925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv826394	chr12:60491264-60516940	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60513600-60516400	Weak transcription	NHLF	lung
2	chr12:60513800-60516400	Weak transcription	Hela-S3	cervix
3	chr12:60516200-60518800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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