Variant report

Variant	rs12303899
Chromosome Location	chr12:60686421-60686422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1021886	1.00[JPT][hapmap]
rs10747869	0.88[ASN][1000 genomes]
rs11173317	0.87[AMR][1000 genomes]
rs11173375	0.88[ASN][1000 genomes]
rs11173381	0.88[ASN][1000 genomes]
rs11173388	0.81[ASN][1000 genomes]
rs11173406	0.95[AFR][1000 genomes]
rs11173425	1.00[JPT][hapmap]
rs12296463	0.87[AMR][1000 genomes]
rs12297378	0.87[AMR][1000 genomes]
rs12299963	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12303842	0.87[AMR][1000 genomes]
rs12306142	0.87[AMR][1000 genomes]
rs12307563	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12308835	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12309540	0.81[AMR][1000 genomes]
rs12316539	0.87[AMR][1000 genomes]
rs12317243	0.81[AMR][1000 genomes]
rs12321091	0.87[AMR][1000 genomes]
rs12321390	0.81[AMR][1000 genomes]
rs12322592	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1304314	0.88[ASN][1000 genomes]
rs1354471	0.88[ASN][1000 genomes]
rs1466939	1.00[JPT][hapmap]
rs1493326	0.87[AMR][1000 genomes]
rs17123427	0.87[AMR][1000 genomes]
rs17123543	0.88[ASN][1000 genomes]
rs17123549	0.88[ASN][1000 genomes]
rs17123637	0.88[ASN][1000 genomes]
rs1948852	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2364147	0.88[ASN][1000 genomes]
rs2655882	1.00[JPT][hapmap]
rs3902471	0.88[ASN][1000 genomes]
rs4320983	0.88[ASN][1000 genomes]
rs4435040	0.88[ASN][1000 genomes]
rs4500518	1.00[JPT][hapmap]
rs4520627	0.88[ASN][1000 genomes]
rs4556582	0.88[ASN][1000 genomes]
rs57945859	0.87[AMR][1000 genomes]
rs61357417	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7132436	0.88[ASN][1000 genomes]
rs7133571	0.87[AMR][1000 genomes]
rs7135299	0.88[ASN][1000 genomes]
rs7139186	0.88[ASN][1000 genomes]
rs7297241	0.88[ASN][1000 genomes]
rs7300012	0.88[ASN][1000 genomes]
rs7300515	0.88[ASN][1000 genomes]
rs7300765	0.87[AMR][1000 genomes]
rs7309556	0.87[AMR][1000 genomes]
rs7310877	0.87[AMR][1000 genomes]
rs73364859	0.87[AMR][1000 genomes]
rs73368995	0.82[AFR][1000 genomes]
rs73370703	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73370791	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7961348	0.81[ASN][1000 genomes]
rs7975734	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60679600-60691000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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