Variant report
| Variant | rs17123637 |
|---|---|
| Chromosome Location | chr12:60646237-60646238 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:60644951..60647277-chr12:60691077..60693506,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs10747869 | 1.00[ASN][1000 genomes] |
| rs10784031 | 0.92[ASN][1000 genomes] |
| rs11173375 | 1.00[ASN][1000 genomes] |
| rs11173381 | 1.00[ASN][1000 genomes] |
| rs11173388 | 0.92[ASN][1000 genomes] |
| rs12296463 | 0.92[ASN][1000 genomes] |
| rs12297378 | 0.84[ASN][1000 genomes] |
| rs12299963 | 1.00[ASN][1000 genomes] |
| rs12303899 | 0.88[ASN][1000 genomes] |
| rs12307563 | 1.00[ASN][1000 genomes] |
| rs12308835 | 1.00[ASN][1000 genomes] |
| rs12309540 | 0.92[ASN][1000 genomes] |
| rs12317243 | 0.92[ASN][1000 genomes] |
| rs12321091 | 0.84[ASN][1000 genomes] |
| rs12321390 | 0.92[ASN][1000 genomes] |
| rs12322592 | 1.00[ASN][1000 genomes] |
| rs1304314 | 1.00[ASN][1000 genomes] |
| rs1354471 | 1.00[ASN][1000 genomes] |
| rs17123427 | 0.84[ASN][1000 genomes] |
| rs17123435 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17123543 | 0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17123549 | 1.00[ASN][1000 genomes] |
| rs1948852 | 0.96[ASN][1000 genomes] |
| rs2364147 | 1.00[ASN][1000 genomes] |
| rs3902471 | 1.00[ASN][1000 genomes] |
| rs4320983 | 1.00[ASN][1000 genomes] |
| rs4435040 | 1.00[ASN][1000 genomes] |
| rs4520627 | 1.00[ASN][1000 genomes] |
| rs4556582 | 1.00[ASN][1000 genomes] |
| rs61357417 | 1.00[ASN][1000 genomes] |
| rs7132436 | 1.00[ASN][1000 genomes] |
| rs7135299 | 1.00[ASN][1000 genomes] |
| rs7139186 | 1.00[ASN][1000 genomes] |
| rs7297241 | 1.00[ASN][1000 genomes] |
| rs7300012 | 1.00[ASN][1000 genomes] |
| rs7300515 | 1.00[ASN][1000 genomes] |
| rs7309556 | 0.92[ASN][1000 genomes] |
| rs7310877 | 0.84[ASN][1000 genomes] |
| rs73370703 | 1.00[ASN][1000 genomes] |
| rs73370791 | 0.96[ASN][1000 genomes] |
| rs7961348 | 0.92[ASN][1000 genomes] |
| rs7975734 | 1.00[ASN][1000 genomes] |
| rs978912 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899137 | chr12:60568891-60797083 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054287 | chr12:60601870-60861866 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv832431 | chr12:60626292-60809233 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60645600-60647000 | Weak transcription | Hela-S3 | cervix |
