Variant report

Variant	rs2364147
Chromosome Location	chr12:60583066-60583067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10747869	1.00[ASN][1000 genomes]
rs10784031	0.92[ASN][1000 genomes]
rs10784049	0.82[JPT][hapmap]
rs11173375	1.00[ASN][1000 genomes]
rs11173381	1.00[ASN][1000 genomes]
rs11173388	0.92[ASN][1000 genomes]
rs12296463	0.92[ASN][1000 genomes]
rs12297378	0.84[ASN][1000 genomes]
rs12299963	1.00[ASN][1000 genomes]
rs12303899	0.88[ASN][1000 genomes]
rs12307563	1.00[ASN][1000 genomes]
rs12308835	1.00[ASN][1000 genomes]
rs12309540	0.92[ASN][1000 genomes]
rs12317243	0.92[ASN][1000 genomes]
rs12321091	0.84[ASN][1000 genomes]
rs12321390	0.92[ASN][1000 genomes]
rs12322592	1.00[ASN][1000 genomes]
rs1304314	1.00[ASN][1000 genomes]
rs1354471	1.00[ASN][1000 genomes]
rs17123427	0.84[ASN][1000 genomes]
rs17123435	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17123543	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17123549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17123637	1.00[ASN][1000 genomes]
rs1948852	0.96[ASN][1000 genomes]
rs3902471	1.00[ASN][1000 genomes]
rs4320983	1.00[ASN][1000 genomes]
rs4435040	1.00[ASN][1000 genomes]
rs4520627	1.00[ASN][1000 genomes]
rs4556582	1.00[ASN][1000 genomes]
rs61357417	1.00[ASN][1000 genomes]
rs7132436	1.00[ASN][1000 genomes]
rs7135299	1.00[ASN][1000 genomes]
rs7139186	1.00[ASN][1000 genomes]
rs7297241	1.00[ASN][1000 genomes]
rs7300012	1.00[ASN][1000 genomes]
rs7300515	1.00[ASN][1000 genomes]
rs7309556	0.92[ASN][1000 genomes]
rs7310877	0.84[ASN][1000 genomes]
rs73370703	1.00[ASN][1000 genomes]
rs73370791	0.96[ASN][1000 genomes]
rs7961348	0.92[ASN][1000 genomes]
rs7975734	1.00[ASN][1000 genomes]
rs978912	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60582400-60583600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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