Variant report
| Variant | rs12306254 |
|---|---|
| Chromosome Location | chr12:22265602-22265603 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10492281 | 0.89[ASN][1000 genomes] |
| rs10770890 | 0.89[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs10770891 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11046301 | 0.95[ASN][1000 genomes] |
| rs12303121 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12829732 | 0.89[ASN][1000 genomes] |
| rs12831501 | 0.89[ASN][1000 genomes] |
| rs1861710 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2080551 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2080554 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2193384 | 0.85[ASN][1000 genomes] |
| rs2193385 | 0.82[ASN][1000 genomes] |
| rs2193386 | 0.89[ASN][1000 genomes] |
| rs2193387 | 0.87[ASN][1000 genomes] |
| rs2900495 | 0.96[ASN][1000 genomes] |
| rs2909067 | 0.96[ASN][1000 genomes] |
| rs2970797 | 0.85[ASN][1000 genomes] |
| rs34299716 | 0.89[ASN][1000 genomes] |
| rs34533494 | 0.87[ASN][1000 genomes] |
| rs35253752 | 0.82[ASN][1000 genomes] |
| rs35683388 | 0.82[ASN][1000 genomes] |
| rs3937473 | 0.87[ASN][1000 genomes] |
| rs4762729 | 0.83[EUR][1000 genomes] |
| rs6487285 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7138641 | 0.83[ASN][1000 genomes] |
| rs71448629 | 0.81[ASN][1000 genomes] |
| rs7296982 | 0.89[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs7300750 | 0.89[ASN][1000 genomes] |
| rs7304110 | 0.96[ASN][1000 genomes] |
| rs7304537 | 0.92[ASN][1000 genomes] |
| rs7968893 | 0.84[ASN][1000 genomes] |
| rs7969364 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051073 | chr12:21910875-22271209 | Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv2758298 | chr12:22140834-22339299 | Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | esv2759883 | chr12:22140834-22736907 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 4 | nsv437729 | chr12:22234058-22268523 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:22256000-22271000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
