Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10492281	0.80[ASN][1000 genomes]
rs10770890	0.80[ASN][1000 genomes]
rs10770891	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11046301	0.86[ASN][1000 genomes]
rs12303121	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12306254	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12829732	0.80[ASN][1000 genomes]
rs12831501	0.80[ASN][1000 genomes]
rs1861710	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2080554	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2193382	0.81[ASN][1000 genomes]
rs2193384	0.83[ASN][1000 genomes]
rs2193385	0.81[ASN][1000 genomes]
rs2193386	0.80[ASN][1000 genomes]
rs2900495	0.87[ASN][1000 genomes]
rs2909067	0.87[ASN][1000 genomes]
rs2970797	0.83[ASN][1000 genomes]
rs34299716	0.80[ASN][1000 genomes]
rs35253752	0.87[ASN][1000 genomes]
rs35683388	0.87[ASN][1000 genomes]
rs6487285	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7138641	0.85[ASN][1000 genomes]
rs71448629	0.83[ASN][1000 genomes]
rs7296982	0.80[ASN][1000 genomes]
rs7300750	0.80[ASN][1000 genomes]
rs7304110	0.87[ASN][1000 genomes]
rs7304537	0.84[ASN][1000 genomes]
rs7968893	0.83[ASN][1000 genomes]
rs7969364	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758298	chr12:22140834-22339299	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2759883	chr12:22140834-22736907	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:22289200-22290000	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr12:22289200-22290000	Active TSS	K562	blood
3	chr12:22289600-22290000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:22289600-22290000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:22289600-22290000	Active TSS	HepG2	liver

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