Variant report

Variant	rs10770890
Chromosome Location	chr12:22274612-22274613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr12:22274123-22274656	MCF-7	breast:	n/a	n/a
2	RAD21	chr12:22274098-22274680	H1-hESC	embryonic stem cell:	n/a	n/a
3	RAD21	chr12:22274161-22274620	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr12:22274480-22274630	HMEC	breast:	n/a	n/a
5	CTCF	chr12:22274500-22274650	NHLF	lung:	n/a	n/a
6	CTCF	chr12:22274012-22274768	A549	lung:	n/a	n/a
7	CTCF	chr12:22274540-22274690	Hela-S3	cervix:	n/a	n/a
8	CTCF	chr12:22274196-22274618	K562	blood:	n/a	n/a
9	CTCF	chr12:22274072-22274642	MCF-7	breast:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:22273884..22274876-chr12:22325749..22326717,3	MCF-7	breast:
2	chr12:22274157..22274855-chr12:22488371..22489172,4	MCF-7	breast:

No data

Variant related genes	Relation type
ST8SIA1	TF binding region
ENSG00000111728	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10492281	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10770891	0.83[ASN][1000 genomes]
rs11046301	0.83[ASN][1000 genomes]
rs11502435	0.96[EUR][1000 genomes]
rs12303121	0.88[ASN][1000 genomes]
rs12306254	0.89[ASN][1000 genomes]
rs12829732	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12831501	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861710	0.82[ASN][1000 genomes]
rs2080551	0.80[ASN][1000 genomes]
rs2080554	0.83[ASN][1000 genomes]
rs2193382	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2193384	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2193385	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2193386	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193387	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2900495	0.84[ASN][1000 genomes]
rs2909067	0.84[ASN][1000 genomes]
rs2955495	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2970797	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34299716	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34533494	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35253752	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35683388	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36064966	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3937473	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6487285	0.83[ASN][1000 genomes]
rs7138641	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71448629	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7296982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7300750	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304110	0.84[ASN][1000 genomes]
rs7304537	0.81[ASN][1000 genomes]
rs7968893	0.95[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7969364	0.83[ASN][1000 genomes]
rs9783526	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758298	chr12:22140834-22339299	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2759883	chr12:22140834-22736907	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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