Variant report
| Variant | rs2955495 |
|---|---|
| Chromosome Location | chr12:22307300-22307301 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10492281 | 0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10770890 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11046329 | 0.82[ASN][1000 genomes] |
| rs11502435 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12829732 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12831501 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12831586 | 0.85[ASN][1000 genomes] |
| rs2111353 | 0.89[ASN][1000 genomes] |
| rs2193384 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2193386 | 0.92[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2193387 | 0.92[EUR][1000 genomes] |
| rs2970797 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs34299716 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs34533494 | 0.92[EUR][1000 genomes] |
| rs35253752 | 0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs35683388 | 0.92[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs36064966 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3937473 | 0.89[EUR][1000 genomes] |
| rs7138641 | 0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs71448629 | 0.93[EUR][1000 genomes] |
| rs7296982 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7300750 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9783526 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758298 | chr12:22140834-22339299 | Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | esv2759883 | chr12:22140834-22736907 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:22307200-22308000 | Enhancers | Primary B cells from peripheral blood | blood |
