Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10492281	0.92[EUR][1000 genomes]
rs10770890	0.89[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes]
rs11046329	0.81[ASN][1000 genomes]
rs11502435	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12829732	0.94[EUR][1000 genomes]
rs12831501	0.94[EUR][1000 genomes]
rs12831586	0.85[ASN][1000 genomes]
rs2111353	0.88[ASN][1000 genomes]
rs2193384	0.94[EUR][1000 genomes]
rs2193386	0.96[EUR][1000 genomes]
rs2193387	0.96[EUR][1000 genomes]
rs2955495	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2970797	0.94[EUR][1000 genomes]
rs34299716	0.95[EUR][1000 genomes]
rs34533494	0.96[EUR][1000 genomes]
rs35253752	0.95[EUR][1000 genomes]
rs35683388	0.96[EUR][1000 genomes]
rs36064966	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3937473	0.94[EUR][1000 genomes]
rs7138641	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71448629	0.98[EUR][1000 genomes]
rs7296982	0.89[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes]
rs7300750	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758298	chr12:22140834-22339299	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2759883	chr12:22140834-22736907	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9783526	SLCO1C1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:22307800-22313000	Weak transcription	Primary B cells from cord blood	blood
2	chr12:22308000-22313400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr12:22309800-22311200	Weak transcription	Primary T cells from cord blood	blood
4	chr12:22310200-22311400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:22311000-22311400	Enhancers	Adipose Nuclei	Adipose

Quick Search: