Variant report

Variant	rs12308405
Chromosome Location	chr12:43374529-43374530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:43373411..43376096-chr12:44151323..44153340,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198001	Chromatin interaction
ENSG00000129317	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10444594	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11181819	0.94[AFR][1000 genomes]
rs11181831	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11181841	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12296289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320175	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12820977	0.91[EUR][1000 genomes]
rs12824782	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34112617	0.97[AFR][1000 genomes]
rs876558	0.94[AFR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43368600-43379200	Weak transcription	Fetal Heart	heart
2	chr12:43370600-43375200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:43371600-43374800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:43372000-43375200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:43372000-43375400	Weak transcription	HUVEC	blood vessel
6	chr12:43372200-43376800	Weak transcription	NHDF-Ad	bronchial
7	chr12:43372400-43374800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:43372600-43375200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr12:43372800-43375800	Enhancers	HSMM	muscle
10	chr12:43373000-43377400	Enhancers	HSMMtube	muscle
11	chr12:43373200-43381200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:43373400-43376000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr12:43373800-43375600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr12:43373800-43376400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr12:43374000-43374800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:43374000-43375600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr12:43374000-43376000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr12:43374000-43381200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:43374200-43375000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr12:43374200-43375200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr12:43374200-43375800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr12:43374200-43379400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr12:43374400-43375800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr12:43374400-43376000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr12:43374400-43377400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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