Variant report

Variant	rs12318159
Chromosome Location	chr12:43371894-43371895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10444594	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11181819	0.94[AFR][1000 genomes]
rs11181831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11181841	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12296289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12308405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320175	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12820977	0.91[EUR][1000 genomes]
rs12824782	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34112617	0.97[AFR][1000 genomes]
rs876558	0.94[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12318159	SHCBP1	trans	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43368600-43379200	Weak transcription	Fetal Heart	heart
2	chr12:43370400-43372000	Enhancers	HUVEC	blood vessel
3	chr12:43370600-43375200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:43371000-43372000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:43371000-43372600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr12:43371200-43372600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:43371200-43373200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:43371400-43372200	Enhancers	NHDF-Ad	bronchial
9	chr12:43371600-43372400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr12:43371600-43374800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:43371800-43372000	Enhancers	Brain Germinal Matrix	brain
12	chr12:43371800-43372400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:43371800-43373000	Weak transcription	HSMMtube	muscle
14	chr12:43371800-43373400	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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