Variant report

Variant	rs12824782
Chromosome Location	chr12:43375932-43375933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10444594	0.91[EUR][1000 genomes]
rs11181831	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11181841	0.91[EUR][1000 genomes]
rs12296289	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12308405	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12318159	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320175	0.91[EUR][1000 genomes]
rs12820977	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61057015	0.83[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43368600-43379200	Weak transcription	Fetal Heart	heart
2	chr12:43372200-43376800	Weak transcription	NHDF-Ad	bronchial
3	chr12:43373000-43377400	Enhancers	HSMMtube	muscle
4	chr12:43373200-43381200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:43373400-43376000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr12:43373800-43376400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:43374000-43376000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr12:43374000-43381200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:43374200-43379400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:43374400-43376000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:43374400-43377400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr12:43375200-43378800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:43375400-43376800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:43375600-43378800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:43375600-43378800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr12:43375600-43379000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr12:43375600-43379000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:43375800-43378800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr12:43375800-43378800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links