Variant report

Variant	rs12308498
Chromosome Location	chr12:42649443-42649444
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10437938	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11181323	0.89[AFR][1000 genomes]
rs11181352	0.94[AFR][1000 genomes]
rs11181358	0.94[AFR][1000 genomes]
rs11181365	0.94[AFR][1000 genomes]
rs12298117	0.82[AFR][1000 genomes]
rs12310800	0.94[AFR][1000 genomes]
rs12311173	0.94[AFR][1000 genomes]
rs12312552	0.94[AFR][1000 genomes]
rs12313898	0.94[AFR][1000 genomes]
rs12320539	0.91[AFR][1000 genomes]
rs12322316	0.94[AFR][1000 genomes]
rs12322344	0.89[AFR][1000 genomes]
rs12385814	0.94[AFR][1000 genomes]
rs28599887	0.89[AFR][1000 genomes]
rs4768396	1.00[AMR][1000 genomes]
rs56736670	0.94[AFR][1000 genomes]
rs61023006	0.89[AFR][1000 genomes]
rs6582387	0.94[AFR][1000 genomes]
rs6582388	0.94[AFR][1000 genomes]
rs7137140	0.89[AFR][1000 genomes]
rs7306048	0.86[AFR][1000 genomes]
rs7974446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv826351	chr12:42584218-42676281	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv826352	chr12:42593124-42675255	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv3397788	chr12:42636734-42665519	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42648800-42650200	Enhancers	Hela-S3	cervix
2	chr12:42649200-42650000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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