Variant report
| Variant | rs28599887 |
|---|---|
| Chromosome Location | chr12:42519925-42519926 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42471800-42524400 | Weak transcription | Esophagus | oesophagus |
| 2 | chr12:42476000-42524400 | Weak transcription | Gastric | stomach |
| 3 | chr12:42476200-42524400 | Weak transcription | Pancreas | Pancrea |
| 4 | chr12:42476600-42523800 | Weak transcription | Hela-S3 | cervix |
| 5 | chr12:42484400-42524800 | Weak transcription | Right Ventricle | heart |
| 6 | chr12:42493000-42524400 | Weak transcription | Brain Substantia Nigra | brain |
| 7 | chr12:42493000-42534400 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |
| 8 | chr12:42505800-42522400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 9 | chr12:42505800-42537000 | Weak transcription | Fetal Stomach | stomach |
| 10 | chr12:42505800-42537000 | Weak transcription | Lung | lung |
| 11 | chr12:42508400-42524600 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 12 | chr12:42512000-42522200 | Weak transcription | HMEC | breast |
| 13 | chr12:42512000-42537400 | Weak transcription | Ovary | ovary |
| 14 | chr12:42512400-42520800 | Weak transcription | Primary T helper cells PMA-I stimulated | -- |
| 15 | chr12:42512400-42521800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 16 | chr12:42512400-42523800 | Weak transcription | Rectal Smooth Muscle | rectum |
| 17 | chr12:42512400-42523800 | Weak transcription | HSMM | muscle |
| 18 | chr12:42512400-42537000 | Weak transcription | Placenta | Placenta |
| 19 | chr12:42512600-42524400 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 20 | chr12:42512600-42524600 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
| 21 | chr12:42512800-42524400 | Weak transcription | Left Ventricle | heart |
| 22 | chr12:42513000-42537000 | Weak transcription | Primary T cells fromperipheralblood | blood |
| 23 | chr12:42513200-42523800 | Weak transcription | NH-A | brain |
| 24 | chr12:42513200-42537200 | Weak transcription | Primary T cells from cord blood | blood |
| 25 | chr12:42513600-42523800 | Weak transcription | NHDF-Ad | bronchial |
| 26 | chr12:42513600-42523800 | Weak transcription | NHLF | lung |
| 27 | chr12:42515400-42523600 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 28 | chr12:42518400-42521200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
| 29 | chr12:42518600-42520200 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 30 | chr12:42518600-42520400 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
| 31 | chr12:42518600-42520400 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
| 32 | chr12:42518600-42520800 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 33 | chr12:42518600-42522800 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
| 34 | chr12:42518800-42520200 | Enhancers | H1 Cell Line | embryonic stem cell |
| 35 | chr12:42518800-42520400 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 36 | chr12:42519000-42520000 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
| 37 | chr12:42519000-42524800 | Weak transcription | Primary T helper memory cells from peripheral blood 1 | blood |
| 38 | chr12:42519000-42537000 | Weak transcription | Right Atrium | heart |
| 39 | chr12:42519200-42520200 | Weak transcription | Brain Angular Gyrus | brain |
| 40 | chr12:42519200-42520400 | Enhancers | HUES6 Cell Line | embryonic stem cell |
| 41 | chr12:42519200-42520400 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
| 42 | chr12:42519200-42521200 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 43 | chr12:42519200-42523600 | Weak transcription | HUVEC | blood vessel |
| 44 | chr12:42519200-42523800 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 45 | chr12:42519200-42523800 | Weak transcription | NHEK | skin |
| 46 | chr12:42519200-42524000 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
| 47 | chr12:42519200-42524200 | Weak transcription | Fetal Kidney | kidney |
| 48 | chr12:42519200-42524400 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 49 | chr12:42519200-42524600 | Enhancers | A549 | lung |
| 50 | chr12:42519200-42524600 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
