Variant report

Variant	rs12312555
Chromosome Location	chr12:41503026-41503027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11179652	1.00[ASN][1000 genomes]
rs11179873	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11609636	1.00[ASN][1000 genomes]
rs12297355	1.00[ASN][1000 genomes]
rs12299059	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12305437	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12312616	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12319487	1.00[ASN][1000 genomes]
rs12319773	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12322831	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12816667	1.00[ASN][1000 genomes]
rs12818816	0.87[ASN][1000 genomes]
rs12826830	1.00[ASN][1000 genomes]
rs13340827	1.00[ASN][1000 genomes]
rs13340830	1.00[ASN][1000 genomes]
rs35850345	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3794251	1.00[ASN][1000 genomes]
rs3794253	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56695779	1.00[ASN][1000 genomes]
rs57025360	1.00[ASN][1000 genomes]
rs61924414	1.00[ASN][1000 genomes]
rs61924417	1.00[ASN][1000 genomes]
rs73279804	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7958656	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv427910	chr12:41374913-41650593	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv428587	chr12:41375635-41546845	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1051524	chr12:41409977-41643387	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3486219	chr12:41494541-41517945	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3486208	chr12:41494583-41517897	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3486230	chr12:41494583-41517897	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv14849	chr12:41494646-41517821	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1048124	chr12:41499221-41585315	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
10	nsv684	chr12:41499912-41545039	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41501400-41503400	Enhancers	Fetal Brain Male	brain
2	chr12:41501400-41503400	Enhancers	Rectal Smooth Muscle	rectum
3	chr12:41501400-41503600	Enhancers	Colon Smooth Muscle	Colon
4	chr12:41502200-41503600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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