Variant report
| Variant | rs12312776 |
|---|---|
| Chromosome Location | chr12:103536009-103536010 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11613585 | 1.00[JPT][hapmap] |
| rs11615631 | 1.00[JPT][hapmap] |
| rs12313548 | 1.00[ASN][1000 genomes] |
| rs12318722 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12318972 | 1.00[ASN][1000 genomes] |
| rs17033429 | 1.00[ASN][1000 genomes] |
| rs17033447 | 1.00[ASN][1000 genomes] |
| rs73183655 | 1.00[ASN][1000 genomes] |
| rs73183658 | 1.00[ASN][1000 genomes] |
| rs73183659 | 1.00[ASN][1000 genomes] |
| rs73183660 | 1.00[ASN][1000 genomes] |
| rs73183661 | 1.00[ASN][1000 genomes] |
| rs73183663 | 1.00[ASN][1000 genomes] |
| rs73183668 | 1.00[ASN][1000 genomes] |
| rs73183672 | 1.00[ASN][1000 genomes] |
| rs73183673 | 1.00[ASN][1000 genomes] |
| rs73183674 | 1.00[ASN][1000 genomes] |
| rs73183675 | 1.00[ASN][1000 genomes] |
| rs73183676 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832501 | chr12:103463927-103648825 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | esv1824379 | chr12:103501562-103549931 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:103534600-103536800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
