Variant report

Variant	rs73183659
Chromosome Location	chr12:103486021-103486022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12312776	1.00[ASN][1000 genomes]
rs12313548	1.00[ASN][1000 genomes]
rs12318722	1.00[ASN][1000 genomes]
rs12318972	1.00[ASN][1000 genomes]
rs1543127	1.00[EUR][1000 genomes]
rs17033429	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17033447	1.00[ASN][1000 genomes]
rs73176076	0.94[EUR][1000 genomes]
rs73176078	1.00[EUR][1000 genomes]
rs73176079	1.00[EUR][1000 genomes]
rs73176080	1.00[EUR][1000 genomes]
rs73176081	0.94[EUR][1000 genomes]
rs73176082	1.00[EUR][1000 genomes]
rs73179703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179704	1.00[EUR][1000 genomes]
rs73183634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183635	1.00[EUR][1000 genomes]
rs73183647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183663	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183672	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183675	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832501	chr12:103463927-103648825	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103483600-103486800	Enhancers	Brain Germinal Matrix	brain
2	chr12:103484000-103486200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr12:103484600-103486600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr12:103484800-103486200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr12:103484800-103486400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:103484800-103487400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr12:103485000-103487200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr12:103485800-103486400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr12:103485800-103486600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr12:103485800-103487400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:103486000-103486400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:103486000-103487200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr12:103486000-103487400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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