Variant report

Variant	rs73176078
Chromosome Location	chr12:103438086-103438087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1543127	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17033429	1.00[EUR][1000 genomes]
rs73176076	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73176079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73176080	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73176081	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73176082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179703	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179704	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183634	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183647	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183649	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183654	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183655	1.00[EUR][1000 genomes]
rs73183658	1.00[EUR][1000 genomes]
rs73183659	1.00[EUR][1000 genomes]
rs73183660	1.00[EUR][1000 genomes]
rs73183661	1.00[EUR][1000 genomes]
rs73183663	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73183668	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73183672	1.00[EUR][1000 genomes]
rs73183673	1.00[EUR][1000 genomes]
rs73183674	1.00[EUR][1000 genomes]
rs73183675	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73183676	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73183684	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899475	chr12:103353538-103474068	Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103436400-103438600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr12:103437400-103438200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr12:103437400-103438400	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr12:103437400-103438800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr12:103437600-103438400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:103437600-103438400	Enhancers	Brain Germinal Matrix	brain
7	chr12:103437600-103438600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr12:103437800-103438400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:103437800-103438400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:103438000-103438200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr12:103438000-103438400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr12:103438000-103438400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr12:103438000-103438400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:103438000-103438600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr12:103438000-103438600	ZNF genes & repeats	Right Atrium	heart

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