Variant report

Variant	rs73176076
Chromosome Location	chr12:103437431-103437432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1543127	0.94[EUR][1000 genomes]
rs17033429	0.94[EUR][1000 genomes]
rs73176078	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73176079	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73176080	0.94[EUR][1000 genomes]
rs73176081	0.89[EUR][1000 genomes]
rs73176082	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73179703	0.94[EUR][1000 genomes]
rs73179704	0.94[EUR][1000 genomes]
rs73183634	0.94[EUR][1000 genomes]
rs73183635	0.94[EUR][1000 genomes]
rs73183647	0.94[EUR][1000 genomes]
rs73183649	0.94[EUR][1000 genomes]
rs73183651	0.94[EUR][1000 genomes]
rs73183654	0.94[EUR][1000 genomes]
rs73183655	0.94[EUR][1000 genomes]
rs73183658	0.94[EUR][1000 genomes]
rs73183659	0.94[EUR][1000 genomes]
rs73183660	0.94[EUR][1000 genomes]
rs73183661	0.94[EUR][1000 genomes]
rs73183663	0.84[EUR][1000 genomes]
rs73183668	0.94[EUR][1000 genomes]
rs73183672	0.94[EUR][1000 genomes]
rs73183673	0.94[EUR][1000 genomes]
rs73183674	0.94[EUR][1000 genomes]
rs73183675	0.89[EUR][1000 genomes]
rs73183676	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899475	chr12:103353538-103474068	Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103436400-103438600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr12:103437400-103437600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr12:103437400-103437600	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr12:103437400-103438000	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr12:103437400-103438000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr12:103437400-103438000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr12:103437400-103438000	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr12:103437400-103438000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:103437400-103438200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr12:103437400-103438400	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr12:103437400-103438800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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