Variant report
| Variant | rs73176080 |
|---|---|
| Chromosome Location | chr12:103438851-103438852 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1543127 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17033429 | 1.00[EUR][1000 genomes] |
| rs7297070 | 0.82[AFR][1000 genomes] |
| rs73176076 | 0.94[EUR][1000 genomes] |
| rs73176078 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73176079 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73176081 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73176082 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73179703 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73179704 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73183634 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73183635 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73183647 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73183649 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73183651 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73183654 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73183655 | 1.00[EUR][1000 genomes] |
| rs73183658 | 1.00[EUR][1000 genomes] |
| rs73183659 | 1.00[EUR][1000 genomes] |
| rs73183660 | 1.00[EUR][1000 genomes] |
| rs73183661 | 1.00[EUR][1000 genomes] |
| rs73183663 | 0.89[EUR][1000 genomes] |
| rs73183668 | 1.00[EUR][1000 genomes] |
| rs73183672 | 1.00[EUR][1000 genomes] |
| rs73183673 | 1.00[EUR][1000 genomes] |
| rs73183674 | 1.00[EUR][1000 genomes] |
| rs73183675 | 0.94[EUR][1000 genomes] |
| rs73183676 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899475 | chr12:103353538-103474068 | Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:103438600-103439600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
