Variant report

Variant	rs73183647
Chromosome Location	chr12:103479736-103479737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103477948..103479966-chr12:103483211..103485459,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1543127	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17033429	1.00[EUR][1000 genomes]
rs73176076	0.94[EUR][1000 genomes]
rs73176078	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73176079	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73176080	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73176081	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73176082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179704	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73183668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183672	1.00[EUR][1000 genomes]
rs73183673	1.00[EUR][1000 genomes]
rs73183674	1.00[EUR][1000 genomes]
rs73183675	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73183676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183684	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832501	chr12:103463927-103648825	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103478600-103479800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr12:103479000-103479800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr12:103479200-103479800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr12:103479200-103480000	Enhancers	Brain Germinal Matrix	brain
5	chr12:103479400-103479800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr12:103479600-103480000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr12:103479600-103484600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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