Variant report

Variant	rs1543127
Chromosome Location	chr12:103474824-103474825
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103473983..103476392-chr12:103479910..103481574,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C12orf42-2	chr12:103474728-103475315	ENSG00000257703.1

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11613585	1.00[JPT][hapmap]
rs11615631	1.00[JPT][hapmap]
rs12318722	1.00[JPT][hapmap]
rs17033418	0.95[AFR][1000 genomes]
rs17033429	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73176076	0.94[EUR][1000 genomes]
rs73176078	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73176079	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73176080	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73176081	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73176082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179703	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179704	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183634	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183635	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183647	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183649	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183654	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73183655	1.00[EUR][1000 genomes]
rs73183658	1.00[EUR][1000 genomes]
rs73183659	1.00[EUR][1000 genomes]
rs73183660	1.00[EUR][1000 genomes]
rs73183661	1.00[EUR][1000 genomes]
rs73183663	0.89[EUR][1000 genomes]
rs73183668	1.00[EUR][1000 genomes]
rs73183672	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183673	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73183675	0.94[EUR][1000 genomes]
rs73183676	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832501	chr12:103463927-103648825	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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