Variant report

Variant	rs12315258
Chromosome Location	chr12:103891576-103891577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11111614	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11111615	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11111616	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12311248	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17034027	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2374073	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7138836	0.93[EUR][1000 genomes]
rs73389785	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103890000-103893200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:103890200-103891600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr12:103890200-103893000	Weak transcription	GM12878-XiMat	blood
4	chr12:103890200-103893200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:103890200-103893200	Weak transcription	NHEK	skin
6	chr12:103890200-103894000	Weak transcription	Fetal Brain Female	brain
7	chr12:103890200-103894200	Weak transcription	Brain Germinal Matrix	brain
8	chr12:103890400-103893200	Weak transcription	HMEC	breast
9	chr12:103890400-103895800	Weak transcription	Thymus	Thymus
10	chr12:103891000-103891600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr12:103891200-103893000	Weak transcription	A549	lung
12	chr12:103891400-103893000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links