Variant report

Variant	rs17034027
Chromosome Location	chr12:103896595-103896596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11111614	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11111615	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11111616	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12311248	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12315258	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2374073	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7138836	0.91[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes]
rs73389785	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528405	chr12:103896595-103901502	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17034027	HSP90B1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103893600-103897200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:103893600-103897200	Weak transcription	HMEC	breast
3	chr12:103893600-103897400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:103894000-103898000	Weak transcription	GM12878-XiMat	blood
5	chr12:103895800-103898200	Enhancers	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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