Variant report

Variant	rs7138836
Chromosome Location	chr12:103893601-103893602
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11111614	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11111615	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11111616	0.95[EUR][1000 genomes]
rs12311248	0.90[EUR][1000 genomes]
rs12315258	0.93[EUR][1000 genomes]
rs17034027	0.91[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes]
rs2374073	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73389785	0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7138836	HSP90B1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103890200-103894000	Weak transcription	Fetal Brain Female	brain
2	chr12:103890200-103894200	Weak transcription	Brain Germinal Matrix	brain
3	chr12:103890400-103895800	Weak transcription	Thymus	Thymus
4	chr12:103893000-103894000	Enhancers	A549	lung
5	chr12:103893000-103894000	Enhancers	GM12878-XiMat	blood
6	chr12:103893200-103893800	Enhancers	NHEK	skin
7	chr12:103893600-103897200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:103893600-103897200	Weak transcription	HMEC	breast
9	chr12:103893600-103897400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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