Variant report

Variant	rs1231819
Chromosome Location	chr1:192792105-192792106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10489514	1.00[ASN][1000 genomes]
rs12076933	1.00[ASN][1000 genomes]
rs12087043	1.00[ASN][1000 genomes]
rs12091901	1.00[ASN][1000 genomes]
rs1625786	1.00[ASN][1000 genomes]
rs16834887	1.00[ASN][1000 genomes]
rs16834924	1.00[ASN][1000 genomes]
rs1770915	1.00[ASN][1000 genomes]
rs1770918	1.00[ASN][1000 genomes]
rs1775687	1.00[ASN][1000 genomes]
rs1775688	1.00[ASN][1000 genomes]
rs1775689	1.00[ASN][1000 genomes]
rs1775690	1.00[ASN][1000 genomes]
rs1775691	1.00[ASN][1000 genomes]
rs1775693	1.00[ASN][1000 genomes]
rs2153083	1.00[ASN][1000 genomes]
rs60641679	1.00[ASN][1000 genomes]
rs61394494	1.00[ASN][1000 genomes]
rs6428139	1.00[ASN][1000 genomes]
rs6660343	1.00[ASN][1000 genomes]
rs6661981	1.00[ASN][1000 genomes]
rs715422	1.00[ASN][1000 genomes]
rs7514204	1.00[ASN][1000 genomes]
rs7523033	1.00[ASN][1000 genomes]
rs7530747	1.00[ASN][1000 genomes]
rs7542329	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192779600-192793200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:192781000-192795000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:192781400-192803400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:192781800-192795200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:192782000-192794400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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