Variant report

Variant	rs16834887
Chromosome Location	chr1:192804301-192804302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:192774228..192777200-chr1:192803483..192805431,2	MCF-7	breast:
2	chr1:192775766..192777613-chr1:192802344..192805276,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10489514	1.00[ASN][1000 genomes]
rs10921281	0.94[EUR][1000 genomes]
rs12076933	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087043	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12091901	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1231819	1.00[ASN][1000 genomes]
rs1625786	1.00[ASN][1000 genomes]
rs16834924	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16834941	1.00[EUR][1000 genomes]
rs16834945	0.88[EUR][1000 genomes]
rs1770915	1.00[ASN][1000 genomes]
rs1770918	1.00[ASN][1000 genomes]
rs1775687	1.00[ASN][1000 genomes]
rs1775688	1.00[ASN][1000 genomes]
rs1775689	1.00[ASN][1000 genomes]
rs1775690	1.00[ASN][1000 genomes]
rs1775691	1.00[ASN][1000 genomes]
rs1775693	1.00[ASN][1000 genomes]
rs2153083	1.00[ASN][1000 genomes]
rs60641679	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61394494	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6428139	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660343	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6661981	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700848	1.00[EUR][1000 genomes]
rs715422	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514204	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523033	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530747	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7542329	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192795400-192809000	Weak transcription	Placenta	Placenta
2	chr1:192796200-192807000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:192797400-192804400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:192800200-192804600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:192800400-192805000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:192800600-192805000	Enhancers	NHEK	skin
7	chr1:192800800-192807000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:192801000-192807000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:192801200-192807000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:192801800-192804400	Enhancers	Rectal Smooth Muscle	rectum
11	chr1:192802600-192804600	Enhancers	Hela-S3	cervix
12	chr1:192802800-192805000	Enhancers	HMEC	breast
13	chr1:192803000-192804400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:192803000-192804800	Enhancers	Colon Smooth Muscle	Colon
15	chr1:192803200-192804400	Weak transcription	Ovary	ovary
16	chr1:192803200-192804600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr1:192803600-192804600	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr1:192803600-192804600	Enhancers	Fetal Lung	lung
19	chr1:192803600-192805200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:192803800-192804400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:192803800-192804400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:192803800-192804800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:192804200-192804600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:192804200-192804600	Enhancers	Duodenum Smooth Muscle	Duodenum

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