Variant report

Variant	rs1775687
Chromosome Location	chr1:192808938-192808939
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:192778079..192780841-chr1:192808866..192811773,3	K562	blood:

Variant related genes	Relation type
ENSG00000116741	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10489514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12076933	1.00[ASN][1000 genomes]
rs12087043	1.00[ASN][1000 genomes]
rs12091901	1.00[ASN][1000 genomes]
rs1231819	1.00[ASN][1000 genomes]
rs1625786	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16834887	1.00[ASN][1000 genomes]
rs16834924	1.00[ASN][1000 genomes]
rs1770915	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1770918	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775688	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775689	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775690	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775691	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775693	1.00[ASN][1000 genomes]
rs2153083	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153084	0.89[AFR][1000 genomes]
rs60641679	1.00[ASN][1000 genomes]
rs61394494	1.00[ASN][1000 genomes]
rs6428139	1.00[ASN][1000 genomes]
rs6660343	1.00[ASN][1000 genomes]
rs6661981	1.00[ASN][1000 genomes]
rs710143	0.83[GIH][hapmap]
rs715422	1.00[ASN][1000 genomes]
rs7514204	1.00[ASN][1000 genomes]
rs7523033	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7530747	1.00[ASN][1000 genomes]
rs7542329	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192795400-192809000	Weak transcription	Placenta	Placenta
2	chr1:192804600-192810800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:192807000-192809800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:192807000-192809800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr1:192807200-192816000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:192807400-192810600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:192807800-192809000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr1:192808200-192809000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr1:192808200-192809000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr1:192808200-192809200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr1:192808600-192809000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr1:192808800-192809800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr1:192808800-192809800	Enhancers	HUES6 Cell Line	embryonic stem cell

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