Variant report

Variant	rs12321016
Chromosome Location	chr12:8798128-8798129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10466796	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10505737	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[EUR][1000 genomes]
rs11544165	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12301158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12322866	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12322918	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12812305	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12813004	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12817900	1.00[CEU][hapmap]
rs12821619	0.92[EUR][1000 genomes]
rs12825998	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17802192	1.00[CEU][hapmap]
rs2043943	0.84[EUR][1000 genomes]
rs2289382	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289383	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[EUR][1000 genomes]
rs2289384	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[EUR][1000 genomes]
rs2289385	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34033038	0.96[EUR][1000 genomes]
rs34079958	0.84[EUR][1000 genomes]
rs34470474	0.92[EUR][1000 genomes]
rs34799141	0.94[EUR][1000 genomes]
rs34847713	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35230480	0.96[EUR][1000 genomes]
rs35327409	0.96[EUR][1000 genomes]
rs35918490	0.84[EUR][1000 genomes]
rs66552846	0.84[EUR][1000 genomes]
rs71447520	0.84[EUR][1000 genomes]
rs71447521	0.84[EUR][1000 genomes]
rs71447522	0.92[EUR][1000 genomes]
rs71447523	0.92[EUR][1000 genomes]
rs71447524	0.98[EUR][1000 genomes]
rs71447525	0.98[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12321016	FAM80B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8788000-8798600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr12:8789600-8813400	Weak transcription	Fetal Muscle Leg	muscle
3	chr12:8792400-8800600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:8792400-8801200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:8792600-8800000	Weak transcription	Placenta	Placenta
6	chr12:8792600-8808000	Weak transcription	Hela-S3	cervix
7	chr12:8792600-8814600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:8793000-8800600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr12:8795000-8808400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr12:8796200-8798600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr12:8796400-8798200	Flanking Active TSS	GM12878-XiMat	blood
12	chr12:8796400-8798400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr12:8796600-8798600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr12:8796600-8798800	Enhancers	Primary B cells from peripheral blood	blood
15	chr12:8796800-8798600	Weak transcription	HSMM	muscle
16	chr12:8796800-8798800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr12:8797000-8798600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr12:8797000-8799000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr12:8797200-8798200	Enhancers	Primary B cells from cord blood	blood
20	chr12:8797600-8798400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr12:8797600-8798600	Enhancers	Primary T cells fromperipheralblood	blood
22	chr12:8797600-8798600	Enhancers	Fetal Thymus	thymus
23	chr12:8797600-8798800	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr12:8797600-8799000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr12:8797600-8800600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr12:8797600-8808800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr12:8797800-8798200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr12:8797800-8798600	Enhancers	Thymus	Thymus
29	chr12:8797800-8798800	Enhancers	Dnd41	blood
30	chr12:8797800-8799000	Enhancers	Primary T cells from cord blood	blood
31	chr12:8797800-8799000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr12:8797800-8799600	Weak transcription	Adipose Nuclei	Adipose
33	chr12:8797800-8799600	Weak transcription	HSMMtube	muscle
34	chr12:8797800-8800600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr12:8798000-8798400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr12:8798000-8799600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr12:8798000-8800600	Weak transcription	NHEK	skin
38	chr12:8798000-8810400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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