Variant report

Variant	rs35230480
Chromosome Location	chr12:8803982-8803983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10466796	0.85[EUR][1000 genomes]
rs10505737	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11544165	0.96[EUR][1000 genomes]
rs12301158	0.96[EUR][1000 genomes]
rs12321016	0.96[EUR][1000 genomes]
rs12322866	0.88[EUR][1000 genomes]
rs12322918	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12811351	0.84[AMR][1000 genomes]
rs12812133	0.84[AMR][1000 genomes]
rs12812305	0.96[EUR][1000 genomes]
rs12813004	0.96[EUR][1000 genomes]
rs12815849	0.83[EUR][1000 genomes]
rs12821619	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12825998	0.94[EUR][1000 genomes]
rs12827867	0.84[AMR][1000 genomes]
rs2043943	0.88[EUR][1000 genomes]
rs2289382	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2289383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289385	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34033038	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34079958	0.83[EUR][1000 genomes]
rs34470474	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34799141	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34847713	0.83[EUR][1000 genomes]
rs35327409	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35365089	0.84[AMR][1000 genomes]
rs35918490	0.87[EUR][1000 genomes]
rs66552846	0.83[EUR][1000 genomes]
rs71447520	0.83[EUR][1000 genomes]
rs71447521	0.83[EUR][1000 genomes]
rs71447522	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71447523	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71447524	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71447525	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8789600-8813400	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:8792600-8808000	Weak transcription	Hela-S3	cervix
3	chr12:8792600-8814600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:8795000-8808400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:8797600-8808800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:8798000-8810400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:8798400-8810000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:8798600-8808400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:8799200-8813600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr12:8799800-8810400	Weak transcription	NH-A	brain
11	chr12:8800000-8804800	Strong transcription	Placenta	Placenta
12	chr12:8800000-8808400	Strong transcription	HSMM	muscle
13	chr12:8800200-8808600	Strong transcription	HSMMtube	muscle
14	chr12:8801200-8810600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr12:8801400-8808200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr12:8801600-8809800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr12:8802000-8806600	Weak transcription	Adipose Nuclei	Adipose
18	chr12:8802200-8807000	Weak transcription	Fetal Thymus	thymus
19	chr12:8802400-8810600	Weak transcription	NHDF-Ad	bronchial
20	chr12:8803200-8804000	Weak transcription	GM12878-XiMat	blood
21	chr12:8803200-8805400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr12:8803200-8807000	Weak transcription	NHEK	skin

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