Variant report

Variant	rs12301158
Chromosome Location	chr12:8799906-8799907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10466796	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10505737	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs11544165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12302099	0.80[LWK][hapmap]
rs12309445	0.85[GIH][hapmap];0.93[TSI][hapmap]
rs12321016	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12322866	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12322918	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.90[LWK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12812305	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12813004	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12817900	1.00[CEU][hapmap]
rs12821619	0.92[EUR][1000 genomes]
rs12825998	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17802192	1.00[CEU][hapmap]
rs2043943	0.84[EUR][1000 genomes]
rs2289382	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289383	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[EUR][1000 genomes]
rs2289384	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[EUR][1000 genomes]
rs2289385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34033038	0.96[EUR][1000 genomes]
rs34079958	0.84[EUR][1000 genomes]
rs34470474	0.92[EUR][1000 genomes]
rs34799141	0.94[EUR][1000 genomes]
rs34847713	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35230480	0.96[EUR][1000 genomes]
rs35327409	0.96[EUR][1000 genomes]
rs35918490	0.84[EUR][1000 genomes]
rs56776129	0.83[AFR][1000 genomes]
rs6487313	0.80[ASW][hapmap];0.85[LWK][hapmap];0.91[MKK][hapmap]
rs66552846	0.84[EUR][1000 genomes]
rs71447520	0.84[EUR][1000 genomes]
rs71447521	0.84[EUR][1000 genomes]
rs71447522	0.92[EUR][1000 genomes]
rs71447523	0.92[EUR][1000 genomes]
rs71447524	0.98[EUR][1000 genomes]
rs71447525	0.98[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12301158	FAM80B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8789600-8813400	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:8792400-8800600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:8792400-8801200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:8792600-8800000	Weak transcription	Placenta	Placenta
5	chr12:8792600-8808000	Weak transcription	Hela-S3	cervix
6	chr12:8792600-8814600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:8793000-8800600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:8795000-8808400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:8797600-8800600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:8797600-8808800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:8797800-8800600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:8798000-8800600	Weak transcription	NHEK	skin
13	chr12:8798000-8810400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:8798200-8801200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr12:8798400-8810000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:8798600-8800600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr12:8798600-8800600	Weak transcription	Thymus	Thymus
18	chr12:8798600-8801200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr12:8798600-8801800	Weak transcription	NHDF-Ad	bronchial
20	chr12:8798600-8808400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:8798800-8801200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr12:8798800-8801600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr12:8799000-8800600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr12:8799000-8801400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr12:8799200-8800800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr12:8799200-8813600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr12:8799600-8800000	ZNF genes & repeats	GM12878-XiMat	blood
28	chr12:8799600-8800000	Genic enhancers	HSMM	muscle
29	chr12:8799600-8800200	Genic enhancers	HSMMtube	muscle
30	chr12:8799600-8800800	Strong transcription	Adipose Nuclei	Adipose
31	chr12:8799600-8801000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr12:8799800-8802200	Enhancers	Fetal Thymus	thymus
33	chr12:8799800-8810400	Weak transcription	NH-A	brain

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