Variant report

Variant	rs12323965
Chromosome Location	chr15:56284745-56284746
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56282892..56284804-chr15:56387312..56388901,2	MCF-7	breast:
2	chr1:145381291..145384278-chr15:56284107..56286728,2	MCF-7	breast:
3	chr15:56284455..56287261-chr15:56299264..56302045,2	MCF-7	breast:
4	chr15:56282050..56287467-chr15:56534024..56538662,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151575	Chromatin interaction
ENSG00000181827	Chromatin interaction
ENSG00000230183	Chromatin interaction
ENSG00000233396	Chromatin interaction
ENSG00000201558	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12324420	0.91[AFR][1000 genomes]
rs58047840	1.00[AMR][1000 genomes]
rs58287003	1.00[AMR][1000 genomes]
rs59787096	1.00[AMR][1000 genomes]
rs60852239	1.00[AMR][1000 genomes]
rs60868661	1.00[AMR][1000 genomes]
rs7164457	1.00[AMR][1000 genomes]
rs7171308	1.00[AMR][1000 genomes]
rs7180360	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904245	chr15:56229760-56324451	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv457159	chr15:56255774-56321854	Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv569543	chr15:56255774-56321854	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv457160	chr15:56273446-56320235	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
6	nsv569544	chr15:56273446-56320235	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
7	nsv457161	chr15:56274443-56324451	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
8	nsv569545	chr15:56274443-56324451	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
9	nsv569546	chr15:56274443-56337527	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56248200-56285200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:56276400-56285000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:56280400-56285200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:56283000-56284800	Enhancers	Brain Substantia Nigra	brain
5	chr15:56283200-56285000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:56283400-56285000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr15:56283600-56284800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:56283600-56284800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:56283600-56284800	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr15:56283600-56284800	Enhancers	Brain Hippocampus Middle	brain
11	chr15:56283600-56285000	Flanking Active TSS	Hela-S3	cervix
12	chr15:56283600-56285000	Flanking Active TSS	Osteobl	bone
13	chr15:56283600-56285200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:56283600-56285200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:56283800-56284800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr15:56283800-56284800	Enhancers	Primary T cells from cord blood	blood
17	chr15:56283800-56284800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr15:56283800-56285000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr15:56283800-56285000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:56283800-56285000	Flanking Active TSS	Fetal Intestine Small	intestine
21	chr15:56283800-56285000	Flanking Active TSS	HUVEC	blood vessel
22	chr15:56283800-56285000	Flanking Active TSS	K562	blood
23	chr15:56283800-56285200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:56283800-56286800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:56284000-56284800	Enhancers	Brain Cingulate Gyrus	brain
26	chr15:56284000-56285000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:56284000-56285200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:56284000-56285200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr15:56284000-56285200	Weak transcription	Stomach Mucosa	stomach
30	chr15:56284000-56286800	Active TSS	Right Atrium	heart
31	chr15:56284000-56287000	Active TSS	NHLF	lung
32	chr15:56284200-56284800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:56284200-56284800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
34	chr15:56284200-56284800	Enhancers	Brain Germinal Matrix	brain
35	chr15:56284200-56284800	Enhancers	Fetal Heart	heart
36	chr15:56284200-56284800	Flanking Active TSS	HepG2	liver
37	chr15:56284200-56285000	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr15:56284200-56285000	Flanking Active TSS	NH-A	brain
39	chr15:56284200-56285200	Flanking Active TSS	Dnd41	blood
40	chr15:56284200-56286800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:56284200-56286800	Active TSS	Fetal Muscle Trunk	muscle
42	chr15:56284200-56287200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr15:56284400-56284800	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr15:56284400-56284800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:56284400-56284800	Enhancers	Colon Smooth Muscle	Colon
46	chr15:56284400-56284800	Enhancers	Fetal Brain Male	brain
47	chr15:56284400-56284800	Enhancers	Fetal Lung	lung
48	chr15:56284400-56284800	Flanking Active TSS	GM12878-XiMat	blood
49	chr15:56284400-56285000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr15:56284400-56285000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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