Variant report

Variant	rs7180360
Chromosome Location	chr15:56266626-56266627
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56260979..56263208-chr15:56266401..56268573,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12323965	1.00[AMR][1000 genomes]
rs58047840	1.00[AMR][1000 genomes]
rs58287003	1.00[AMR][1000 genomes]
rs59787096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60852239	1.00[AMR][1000 genomes]
rs60868661	1.00[AMR][1000 genomes]
rs7164457	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7171308	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904245	chr15:56229760-56324451	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv457159	chr15:56255774-56321854	Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv569543	chr15:56255774-56321854	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56229600-56282600	Weak transcription	NHLF	lung
2	chr15:56231400-56284200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:56236200-56276000	Weak transcription	HUVEC	blood vessel
4	chr15:56236800-56282800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:56243200-56276200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:56248200-56285200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:56251600-56281600	Weak transcription	Osteobl	bone
8	chr15:56253600-56282400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:56257600-56281600	Weak transcription	Fetal Intestine Large	intestine
10	chr15:56257600-56283600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:56257600-56283800	Weak transcription	Primary T cells from cord blood	blood
12	chr15:56257800-56270200	Weak transcription	Aorta	Aorta
13	chr15:56257800-56273800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:56262600-56269200	Weak transcription	A549	lung
15	chr15:56262800-56274200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:56262800-56276200	Weak transcription	NHEK	skin
17	chr15:56262800-56276400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:56262800-56276600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:56262800-56276600	Weak transcription	HMEC	breast
20	chr15:56263000-56269000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr15:56263000-56275400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:56263800-56282400	Weak transcription	Fetal Intestine Small	intestine

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